Atlantic cod (Gadus morhua)

Postdoctoral projects at the Center of Ecological and Evolutionary Synthesis (CEES), University of Oslo, Norway.

CodS

Structured populations represent confined interbreeding species units, which have long been assumed to be non-existent in open marine environments due to the lack of geographical barriers. However, this is increasingly disproved and population structure is being documented at fine scales. Populations often show high levels of genetic differentiation important for adaptation to local environments, and lack of knowledge about this variation can lead to its irretrievable loss.
Since the 1970’s, Atlantic cod (Gadus morhua) stocks have been declining in the North Sea's Kattegat/Skagerrak (KASK) area and adjacent fjords leading to a near extinction of cod in the Swedish fjords. Whether the remaining cod in this area represents a large panmictic population where recruitment from offshore areas can substitute for local losses, of whether coastal areas and fjords are home to declining locally adapted populations depite the high potential for gene-flow is still an open question.
Within the internationally collaborative project CodS I am employing a large-scale genomic approach, where 500 cod individuals were genotyped at 10.000 single-nucleotide polymorphism (SNPs) markers to answer this question, and to propose a management strategy for potentially locally adapted Swedish fjord populations of cod.

Aquagenome

The Aqua Genome project is a large collaborative effort to create a sustainable basis for aquaculture and fisheries management of Atlantic salmon and Atlantic cod by studying the genomic background of thousands of fish. Our group is investigating different aspects about Atlantic cod from it's entire distribution utilizing the latest high-throughput sequencing technologies, as well as breeding material and individually tagged fish to recover behavioural data. Find more about the project here: aquagenome.uio.no.

Publications

2022_Matschiner

Matschiner M, Barth JMI, Tørresen OK, Star B, Baalsrud HT, Ono Brieuc MS, Pampoulie C, Bradbury I, Jakobsen KS, Jentoft S. Supergenes origin and maintenance in Atlantic cod. Nature Ecology & Evolution (2022). doi.org/10.1038/s41559-022-01661-x
Download pdf.     Go to journal.

2021_Pinsky

Pinsky ML, Eikeset AM, Helmerson C, Bradbury IR, Bentzen P, Morris C, Gondek-Wyrozemska AT, Baalsrud HT, Ono Brieuc MS, Kjesbu OS, Godiksen JA, Barth JMI , Matschiner M, Stenseth NC, Jakobsen KS, Jentoft S, Star B Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic. Proceedings of the National Academy of Sciences (2021), 118 (15), e2025453118. doi.org/10.1073/pnas.2025453118
Download pdf.     Go to journal.

2021_Matschiner

Matschiner M, Barth JMI, Tørresen OK, Star B, Baalsrud HT, Ono Brieuc MS, Pampoulie C, Bradbury I, Jakobsen KS, Jentoft S. Origin and fate of supergenes in Atlantic cod. bioRxiv preprint (2021). doi.org/10.1101/2021.02.28.433253 (now published in Nature Ecology & Evolution)
Download pdf.     Go to preprint.

2019_Barth

Weist P, Schade FM, Damerau M, Barth JMI, Dierking J, André C, Petereit C, Reusch T, Jentoft S, Hanel R, Krumme U. Assessing SNP-markers to study population mixing and ecological adaptation in Baltic cod. PLOS ONE (2019), 14 (6), e0218127. doi.org/10.1371/journal.pone.0218127
Download pdf.     Go to journal.

2019_Barth

Barth JMI, Villegas‐Ríos D, Freitas C, Moland E, Star B, André C, Knutsen H, Bradbury I, Dierking J, Petereit C, Righton D, Metcalfe J, Jakobsen KS, and Olsen EM, Jentoft S. Disentangling structural genomic and behavioral barriers in a sea of connectivity. Molecular Ecology. Special issue: The role of genomic structural variants in adaptation and diversification (2019), 28 (6), 1394-1411. doi.org/10.1111/mec.15010
Download pdf.     Go to journal.

2018_Svedaeng

Svedäng H, Barth JMI, Svenson A, Jonsson P, Jentoft S, Knutsen H, and André C. Local cod (Gadus morhua) revealed by egg surveys and population genetic analysis after longstanding depletion on the Swedish Skagerrak coast. ICES Journal of Marine Science (2019), 76 (2), 418–429. doi.org/10.1093/icesjms/fsy166
Download pdf.     Go to journal.

2018_Langangen

Langangen Ø, Färber L, Stige LC, Diekert FK, Barth JMI, Matschiner M, Berg PR, Star B, Stenseth NC, Jentoft S, Durant JM. Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Global Change Biology (2019), 25, 134-143. doi.org/0.1111/gcb.14474
Download pdf.     Go to journal.

2017_Bernatchez_titlepage

Bernatchez L, Wellenreuther M, Araneda C, Ashton D, Barth JMI, Beacham TD, Maes GE, Martinsohn JT, Miller KM, Naish KA, Ovenden JR, Primmer CR, Ho Young S, Therkildsen NO, Withler RE. Harnessing the power of genomics to secure the future of seafood. Trends in Ecology and Evolution (2017), 32 (9), 665-680. doi.org/10.1016/j.tree.2017.06.010
Download pdf.     Go to journal.

cod_connectivity_titlepage

Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes P, Star B, Stenseth NC, Svedäng H, Jentoft S, André C. Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Molecular Ecology (2017), 26 (17), 4452-4466. doi.org/10.1111/mec.14207
Download pdf.     Go to journal.

cod_inversions_titlepage

Berg PR, Star B, Pampoulie C, Sodeland M, Barth JMI, Knutsen H, Jakobsen KS, Jentoft S. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod. Scientific Reports (2016) 6:23246. doi.org/10.1038/srep23246
Download pdf.     Go to journal.

Outreach

Tigano A. News & Views article: Evolution of cod supergenes. Nature Ecology and Evolution News & Views article (2022) doi.org/10.1038/s41559-022-01662-w     Download pdf.     Go to article.

Matschiner M. Behind the paper: Inversions, not introgression, behind supergenes in Atlantic cod. Nature Ecology and Evolution blog post     Go to blog post.

Supergene explains different behaviour of migratory and stationary cod. University of Oslo Research Magazine Titan (February 2022)     Go to magazine.